PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G065400.1
Common NameB456_004G065400, LOC105790566
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 341aa    MW: 37660.5 Da    PI: 7.7194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G065400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013179198120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C k+F+r  nL+ H+
  Gorai.004G065400.1 179 FSCHVCCKTFNRYNNLQMHM 198
                         89*****************9 PP

2zf-C2H214.97.9e-05263285123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k F  k + ++H +++
  Gorai.004G065400.1 263 FTCRKCDKAFAVKGDWRTHEKNC 285
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-5172201No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4179198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055179206IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-6247283No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5250283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTDPYSNLFP GGGFNFVPLN PHYATRFSTT APPPPPPHPT HSSQPHTNNN IIFNTYSSIE  60
AQTPHPWPAP PQQALPLINY LSPTRQEENE PSSSFMEGDK GMNKEAAAAA AADEEAETVT  120
LHIGLPIPIS DLGFGGLSPS AHVTDRLGGN GSAVPGYPLT KGQYWIPTPT QILVGPTQFS  180
CHVCCKTFNR YNNLQMHMWG HGSQYRKGPD SLRGSQPTAM LRLPCYCCAP GCKHNIEHPR  240
ARPLKDFRTL QTHYKRKHGV KPFTCRKCDK AFAVKGDWRT HEKNCGKIWY CICGSDFKHK  300
RSLKDHIKAF GPGHAAVGID CLDEDEEPGS EFELEYESPI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153390.0JX615339.1 Gossypium hirsutum clone NBRI_GE59271 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473683.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2P7V80.0A0A0D2P7V8_G
STRINGPOPTR_0001s27490.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2815133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]